Cleanrooms and Pharmaceutical Plants

Pharmaceutical
For 47 years, MSE Engenharia has designed and built cleanrooms and pharmaceutical plants, with solutions for greenfield projects, expansions and industrial modernization for operations with demanding regulatory requirements.
A MSE em indústrias farmacêuticas e salas limpas

A MSE Engenharia é uma empresa brasileira de engenharia e construção de indústrias farmacêuticas e salas limpas, com 47 anos de atuação. Executa projeto em BIM, construção civil, salas limpas ISO 14644, HVAC farmacêutico, utilidades limpas, montagem eletromecânica, comissionamento e suporte à qualificação QI, QO e QD, conforme a RDC 658/2022 da ANVISA. Trabalha em modelo EPC turnkey, sob um único responsável técnico, inclusive em obras dentro de plantas em operação.

Atualizado em outubro de 2026.
Engineering for the Pharmaceutical Industry
In the pharmaceutical industry, every design decision directly affects compliance, product registration and operational continuity — and deviations can lead to significant losses. MSE works with an integrated vision, bringing design engineering, construction and qualification support together in a single scope, ensuring full responsibility until the operation is stable and validated.
FEL 2/3 Design
with constructability and regulatory compliance as decision criteria from the very start of development.
Multidisciplinary Team
‍All disciplines integrated in-house, under a single technical responsibility - from design to qualification.
In-House Resources
Equipment fleet, prefabrication and a direct, specialized workforce, with no dependence on critical subcontractors.
Proven Track Record
47 years delivering pharmaceutical plants, from design to startup, under a single point of responsibility. Operations approved in ANVISA, FDA and EMA inspections.

Eurofarma

Montes Claros - MG - New pharmaceutical plant
+ 405 km of power and control cables
+ 52 km of carbon steel piping
+ 7.5 km of stainless steel piping
+ 474 t of steel structure
Medium- and low-voltage electrical installations and grounding
Fire protection and fire alarm systems
Process piping and equipment, automation and instrumentation
Team of up to 840 workers

Novo Nordisk

Montes Claros - MG - Plant expansion
+ 104 km of power and control cables
+ 725 t of carbon steel piping
+ 13 t of stainless steel piping
+ 1,746 t of steel structures
Medium- and low-voltage electrical, fire protection and industrial utilities
Automation, BMS, instrumentation and telecommunications
Off-site pre-assembly, commissioning and start-up
Team of up to 940 workers

Aché

Cabo de Santo Agostinho - PE - New pharmaceutical plant
Pump house, external main, hydrants and sprinklers
Fire detection and alarm system
Novec clean-agent suppression system
Cold water, reuse water and stormwater
Sanitary and industrial sewage
Signage, extinguishers, sanitary fixtures and fittings

CNPEM - LNBio

Campinas - SP - BSL-3 Laboratory
Construction and installations of a biosafety level 3 laboratory
Containment environments with controlled pressure and airflow
Dedicated HVAC for the biological containment area
Electrical installations, lightning protection and fire protection
Utilities and plumbing installations
Execution on an operating research campus
Get in touch
with our engineering team.

EPC and Turnkey Industrial Contracts

We take on the complete project under a single contract and a single point of responsibility. Fewer interfaces, more control of cost, schedule and performance through to operation.

Multidisciplinary Design in BIM (FEL 2/3)

We develop projects from FEL 1 to detailed design, integrating every discipline in BIM. More precision, less rework and data-driven decisions.

Civil Construction and Industrial Works

We execute complete industrial works, from the foundations to the qualified critical areas. Robust structures, controlled environments and a high construction standard end to end.

Electromechanical Assembly and Prefabrication

We install equipment and systems with technical rigor and full traceability. Quality assured from assembly through to the project's final qualification.

Cleanrooms and Classified Environments

We design and build cleanrooms in accordance with ISO 14644 and GMP standards. Strict control of particles, pressure, temperature and humidity in every room.

Pharmaceutical HVAC and Classified Air Conditioning

We implement HVAC systems with precise control of pressure and particles. Stable, monitored environments in full compliance with GMP grades.

E-Houses and Electrical Switchboards

We design and manufacture e-houses and switchboards with state-of-the-art technology. Prefabricated, tested solutions ready to operate in complete safety.

CAPEX Management and Construction Control

Execution of works in operating plants without interrupting production.
Precise planning, risk control and guaranteed operational continuity.

ANVISA, FDA and EMA Compliance

We deliver projects aligned with GMP and the main global regulatory agencies. Proven track record of plants approved with no shutdowns in inspections.

Electromechanical Assembly in Critical Areas

We install process equipment and skids with technical rigor and traceability. Quality assured from assembly through to the system's final qualification.

Commissioning, Startup and Assisted Handover

We validate every system through to the safe start of production. Assurance that everything works as designed and within the standards.

All the engineering in one place

MSE brings design, construction, assembly and qualification together under a single point of responsibility. An in-house, multidisciplinary team, with no dependence on critical subcontractors.

How the design and construction of a pharmaceutical cleanroom works

A pharmaceutical plant is not an industrial shed with equipment inside. It is a project in which air, pressure, temperature and the flow of people and materials are part of the production process and must be demonstrated to ANVISA. Every cleanroom, every HVAC duct and every utility point is born in the design with a regulatory function. That is why hiring an engineering company that masters regulated environments changes the outcome: fewer deviations in qualification and an operation that passes inspection.

What a cleanroom is and how it is classified

A cleanroom is an environment with control of particles, differential pressure, temperature, humidity and air changes. The technical reference is the ISO 14644 standard, which classifies the environment from ISO 1 to ISO 9 according to the number of particles per cubic meter. The old class 100 cleanroom corresponds today to ISO 5; class 10,000 to ISO 7; class 100,000 to ISO 8. In Brazil, ANVISA's RDC 658/2022 translates this into grades A, B, C and D of Good Manufacturing Practices. Grade A is the critical point of sterile filling; grade D covers areas for solids preparation and primary packaging. Defining the grade of each room is the first design decision, because it is what sizes the HVAC, the HEPA filtration, the finishes and the cost per square meter.

The stages of implementing a pharmaceutical plant

The work begins with the conceptual study (FEL 1 and FEL 2), which defines the process flow, area segregation, classification zoning and the utilities strategy. This phase produces the URS, the user requirements specification, which will be the basis for all qualification. Then come basic design (FEL 3), detailed design in BIM, with all disciplines coordinated, and the issue of construction documents. Only then do earthworks, foundations, structure, envelope, cleanroom panels, HVAC, clean utilities, electrical and automation come in. The project ends with commissioning and installation, operational and performance qualification (IQ, OQ and PQ), which generate the documented evidence required in the health inspection.

Pharmaceutical HVAC: the heart of the classified area

The HVAC system of a pharmaceutical plant does much more than air conditioning. It maintains the pressure cascade between rooms, ensures the air changes per hour required for each grade, filters the air in stages down to the terminal HEPA filters and controls temperature and humidity within validated ranges. Each zone needs dedicated or segregated air handling units to avoid cross-contamination, and the entire system is monitored by a BMS with continuous recording. An undersized HVAC is the most common cause of failure in qualification, because differential pressure and recovery time are tested and documented room by room.

Clean utilities and critical systems

Beyond HVAC, the plant depends on utilities that are also qualified: purified water and water for injection, clean steam, oil-free compressed air, nitrogen and CIP and SIP cleaning systems. On the electrical side, a pharmaceutical plant requires redundancy and continuity: substation, generator sets, UPS for critical areas and switchboards with traceability. MSE designs and manufactures its own e-houses and electrical switchboards, which reduces interfaces and energization lead times.

How long it takes to build a pharmaceutical plant

A new mid-sized facility usually takes 18 to 30 months between concept definition and validated startup. An expansion or renovation of a classified area in an existing plant takes 8 to 14 months. What weighs most on the schedule is not the civil works, but qualification and long-lead equipment: air handling units, purified water generators, autoclaves and process skids. Specifying these items during the design phase and integrating the validation plan into the construction schedule is what protects the deadline.

How much a pharmaceutical cleanroom costs

Cost is driven by the classification grade and by the complexity of the utilities, not by built area. A square meter of grade D area costs a fraction of a square meter of grade A area with isolators and aseptic filling. The type of product (solids, liquids, steriles, biologics), the need for containment for highly potent products and the power infrastructure available at the site also weigh heavily. A well-executed conceptual design reduces this cost by avoiding over-classifying rooms that do not need it.

Works in operating plants

A large share of pharmaceutical projects takes place inside plants that cannot stop. This requires planning of work fronts, dust containment barriers, access control, change management and coordination with the client's quality assurance. MSE carries out expansions, renovations of classified areas and new lines in operating plants, keeping production and the regulatory status of neighboring areas intact.

EPC turnkey or separate contracts

Hiring the designer, the builder, the installer and the qualification company separately looks cheaper on paper. In practice, it creates gray areas between contracts, and that is where rework, delays and inspection deviations appear. In the EPC turnkey model, design, construction, assembly, commissioning and qualification support stay under a single technical point of responsibility, with an in-house, multidisciplinary team. For 47 years MSE has delivered pharmaceutical plants in this model, with operations approved in ANVISA, FDA and EMA inspections.

Frequently asked questions about cleanrooms and pharmaceutical plants

What is the difference between ISO 5, ISO 7 and ISO 8 cleanrooms?

The ISO 14644 classification indicates the particle limit per cubic meter of air. ISO 5 (formerly class 100) allows up to 3,520 particles of 0.5 µm and is used for sterile filling, grade A. ISO 7 (class 10,000) corresponds to grade B at rest and grade C in operation. ISO 8 (class 100,000) is equivalent to grade D, typical of solids and primary packaging areas. The lower the number, the greater the filtration, the air changes and the cost.

What does ANVISA require in the construction of a pharmaceutical plant?

RDC 658/2022 establishes the Good Manufacturing Practices for medicines and covers facilities, flows, area classification, HVAC, utilities and qualification. In practice, the inspection verifies whether the design prevents cross-contamination, whether the classified areas are qualified with documented evidence and whether the critical systems have monitoring and traceability.

How long does it take to build a cleanroom?

A classified area inside an existing plant takes 8 to 14 months between design and qualification. A new mid-sized pharmaceutical plant takes between 18 and 30 months. The schedule depends on the classification grade, the complexity of the utilities and the lead time of HVAC and process equipment.

Does MSE handle design, construction and qualification?

Yes. We work in an EPC turnkey model: multidisciplinary design in BIM, civil construction, cleanrooms, pharmaceutical HVAC, utilities, electromechanical assembly, our own e-houses and switchboards, commissioning and IQ, OQ and PQ qualification support, all under a single technical point of responsibility.

Is it possible to carry out works in a pharmaceutical plant without stopping production?

Yes, and it is the most common scenario in expansions and modifications. It requires planning of work fronts, containment barriers, access control, change management and alignment with the client's quality assurance to preserve the regulatory status of the areas in operation.

We develop solutions for the pharmaceutical industry,
creating safe, efficient production environments aligned
with the highest quality standards.